FastQCFastQC Report
Wed 8 May 2024
EGAF00007961389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507240
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31920.6292879110480246No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13070.257668953552559No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11150.2198170491286176No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8790.17329074994085641No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8110.15988486712404384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5960.11749861998265121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5230.10310701048813185No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5200.10251557448150778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)