FastQCFastQC Report
Wed 8 May 2024
EGAF00007961391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483509
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64771.339582096713815No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11710.24218783931633123No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11600.23991280410499083No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8230.17021399808483398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7430.1536682874569036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5380.11126990397283193No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5040.10423797695596151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)