FastQCFastQC Report
Wed 8 May 2024
EGAF00007961393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512592
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31470.6139385710272498No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13270.25888035708711804No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11760.22942223054593125No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9100.17752910697006588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7880.15372850142023287No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5510.1074928988357212No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5340.10417642101320347No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5280.10300589942878546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)