FastQCFastQC Report
Wed 8 May 2024
EGAF00007961395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491537
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62881.2792526300156448No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12110.2463700596292853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11810.2402667550967679No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8320.16926497903514895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.15258261331293474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5470.11128358597623372No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5340.10863882067880953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)