FastQCFastQC Report
Wed 8 May 2024
EGAF00007961396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500267
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20090.40158555331453No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9680.1934966727767372No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7310.1461219708675567No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6380.1275318979664859No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5950.11893648791545315No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5890.11773712837344857No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5290.10574353295340287No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT5200.10394449364039603No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5070.10134588129938613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)