FastQCFastQC Report
Wed 8 May 2024
EGAF00007961397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500267
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32160.6428567145144494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20540.41058074987956433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13360.2670573913530175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10410.20808888053779284No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9570.19129784694972884No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9140.1827024368986961No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8600.17190820102065496No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7170.14332346526954606No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT6230.12453349911147449No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5950.11893648791545315No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5770.11533840928943943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.10234534758438993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)