FastQCFastQC Report
Wed 8 May 2024
EGAF00007961398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474239
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18030.3801880486421404No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8740.18429526040667257No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7310.1541416880518051No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5860.12356638741225416No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5720.12061428941946993No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5140.10838416916364955No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT4880.10290170146276456No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4860.1024799731780811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)