FastQCFastQC Report
Wed 8 May 2024
EGAF00007961399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474239
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63901.3474218695636588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17740.3740729885142302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12260.25851943851096176No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9250.19504933166610083No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9020.19019945639224103No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8560.18049970584452144No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8000.1686913138733845No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6560.1383268773761753No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5910.12462070812396281No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5700.12019256113478646No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5260.11091453887175032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.10922762573301646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)