FastQCFastQC Report
Wed 8 May 2024
EGAF00007961400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502272
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19390.3860458078491335No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9860.1963079765545362No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8040.16007262996941896No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6690.13319476299694188No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5850.11647075688073394No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5810.115674375637105No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5080.10114041794087665No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT5080.10114041794087665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)