FastQCFastQC Report
Wed 8 May 2024
EGAF00007961401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502272
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30460.6064443170234455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19460.3874394750254842No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13360.2659913353720693No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10550.2100455530071356No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10340.2058645514780836No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.17819030326197757No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8710.17341201580020388No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7230.14394590978593272No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT6080.1210499490316004No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5860.1166698521916412No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5770.11487799439347604No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5130.10213589449541284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)