FastQCFastQC Report
Wed 8 May 2024
EGAF00007961403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483375
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60461.2507887251099044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19410.40155159038013966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13010.2691492112748901No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9940.20563744504784068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9800.20274114300491336No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8550.1768813033359193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8500.17584690974915956No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6700.13860874062580814No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT6160.12743728988880268No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5720.11833462632531679No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5360.1108869925006465No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.1077838117403672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)