FastQCFastQC Report
Wed 31 May 2023
EGAF00007961404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476886
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18800.39422419613911924No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14680.3078303829426739No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13350.2799411180030448No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13160.27595693729738346No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12730.26694010727930784No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11820.24785797863640366No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11500.24114777955318462No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11480.24072839211048344No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10730.2250013630091888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10110.2120003522854519No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9580.2008865850538703No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9060.18998251154363938No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8300.1740457887209941No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7290.152866722864584No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7070.14825346099487088No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6740.14133356819030124No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6600.1383978560913929No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6370.13357490050032922No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5920.12413868303955244No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5900.12371929559685124No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5800.1216223583833453No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5670.11889634000578754No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5410.11344430325067206No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5290.11092797859446493No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5030.10547594183934945No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4990.10463716695394706No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4890.10254022974044111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)