FastQCFastQC Report
Wed 8 May 2024
EGAF00007961405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476886
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29410.6167092344921008No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25950.5441552069047948No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24380.5112332926527514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15490.32481557437207215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15060.3157987443539966No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14920.3128630322550882No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13730.28790947941436734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12030.2522615467847662No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11460.24030900466778224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11430.23967992350373046No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10400.21808147020461913No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9520.19962842272576675No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9290.19480546713470306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9080.19040189898634055No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7490.1570605972915959No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7340.15391519147133695No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7070.14825346099487088No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7060.14804376727352028No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6960.14594683006001435No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6880.1442692802892096No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6700.14049479330489886No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6170.1293810260733173No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5940.12455807048225363No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5820.12204174582604649No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5700.11952542116983934No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5650.11847695256308635No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5560.116589709070931No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5480.11491215930012624No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5280.11071828487311433No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5130.10757287905285541No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5130.10757287905285541No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5000.10484686067529765No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4810.10086267996963635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)