FastQCFastQC Report
Wed 8 May 2024
EGAF00007961406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451779
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17830.3946619918145819No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13360.2957198099070563No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12970.28708727054599703No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11910.2636244712569641No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11710.25919752799488244No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11070.2450313095562211No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10770.23839089466309854No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10690.23662011735826588No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9320.20629555601300634No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9120.20186861275092466No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9090.20120457126161242No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8200.18150467374534893No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7920.1753069531784346No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6840.1514014595631935No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6390.14144083722350972No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6390.14144083722350972No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6120.13546446381969945No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5900.1305948262314096No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5630.12461845282759933No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5330.11797803793447681No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5230.11576456630343597No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5190.11487917765101964No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5030.11133762304135429No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4950.10956684573652162No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4870.10779606843168894No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4650.1029264308433991No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4590.10159834786477458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)