FastQCFastQC Report
Wed 8 May 2024
EGAF00007961407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451779
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59461.316130231816884No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25030.5540319492495225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23430.518616403152869No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14220.31475566593400756No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13890.3074512095515728No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13140.2908501723187665No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12830.28398841026253985No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11060.24480996239311698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10770.23839089466309854No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9900.21913369147304324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9860.2182483028206269No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8980.19876975246746748No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8900.19699897516263482No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8660.1916866432481368No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7040.1558284028252752No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7010.15516436133596295No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6590.1458677804855914No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6560.14520373899627917No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6390.14144083722350972No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6340.1403341014079893No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.1336936865148668No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.13037347906830551No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5700.1261678829693279No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5470.12107689821793399No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5310.11753534360826866No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5290.11709264928206048No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5150.1139937889986033No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5000.11067358155204204No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4870.10779606843168894No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4850.10735337410548078No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4720.10447586098512769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)