FastQCFastQC Report
Wed 8 May 2024
EGAF00007961408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479593
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18510.3859522553498487No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14470.3017141617996927No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14210.2962928983533955No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13480.2810716586772534No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13250.2762759256286059No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11830.24666748680652137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11220.233948368720978No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11130.23207177752802896No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10500.21893563917738582No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10460.21810159864718626No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9460.19725058539219711No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8860.18473997743920367No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8220.17139532895601062No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7500.15638259941241844No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7020.14637411305002368No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6790.14157838000137618No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6570.13699115708527856No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6540.1363656266876289No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6220.12969330244603236No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5860.12218693767423627No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5840.12176991740913651No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5640.11759971475813868No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5450.11363802223969073No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5330.11113590064909204No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5300.11051037025144236No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5070.10571463720279488No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5060.10550612707024498No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4910.10237847508199661No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4880.10175294468434694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)