FastQCFastQC Report
Wed 8 May 2024
EGAF00007961409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479593
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30310.6319942117587204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26630.5552624829803604No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23940.4991732573244397No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15830.3300715398264779No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15150.31589285081308527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15150.31589285081308527No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14370.29962906047419374No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11910.24833556786692051No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11710.24416536521592266No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11160.23269730792567864No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10390.21664202771933702No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9350.19495697393414835No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9010.18786762942745203No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8880.18515699770430344No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7570.15784217034026768No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7460.15554855888221888No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7360.15346345755671995No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7170.14950176503827203No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6980.1455400725198241No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6960.14512305225472433No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6670.13907625841077748No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6630.13824221788057792No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6030.12573160992758445No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5710.11905928568598792No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5680.11843375528833824No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5640.11759971475813868No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5490.11447206276989029No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5450.11363802223969073No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5410.11280398170949116No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5370.1119699411792916No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5300.11051037025144236No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5150.107382718263194No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5100.10634016760044454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)