FastQCFastQC Report
Wed 8 May 2024
EGAF00007961411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457119
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58871.287848459591485No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24930.5453722116122935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23190.5073077251219048No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14480.3167665312533498No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14080.3080160745888926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13810.302109516340384No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12980.2839523187616354No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11550.25266943618620097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10460.22882444177555517No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10070.22029274652770942No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9680.21176105127986367No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9280.20301059461540646No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8340.18244702145393213No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8180.17894683878814927No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7220.15794574279345203No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7050.1542267987110577No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6730.14722643337949198No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6730.14722643337949198No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6410.14022606804792626No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6170.13497579404925195No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6140.13431950979941765No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6050.13235065704991478No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5800.12688162163462907No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5590.12228763188578903No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5350.11703735788711474No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.11441222088777758No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5230.11441222088777758No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5100.11156832247182899No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5010.10959946972232615No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4950.10828690122265756No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4760.1041304343070404No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4610.10084901305786895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)