FastQCFastQC Report
Wed 8 May 2024
EGAF00007961413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502902
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38390.7633694039793041No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31570.6277565012666484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22910.4555559532473523No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13340.2652604284731419No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG12930.2571077466385101No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11720.233047392931426No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8960.1781659249714656No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8940.17776823317465432No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8160.16225825309901332No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7120.14157827966482536No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6740.1340221355254105No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6440.1280567585732409No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5960.11851215544976954No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5810.11552946697368474No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5620.11175139490397731No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5550.11035947361513773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)