FastQCFastQC Report
Wed 8 May 2024
EGAF00007961415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477395
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65441.3707726306308194No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36150.7572345751421778No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20490.4292043276532012No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12830.2687501963782612No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG11680.24466112967249343No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11400.23879596560500213No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8320.17427916086259806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7370.1543794970621812No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7330.15354161648111103No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7150.1497711538662952No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6230.130499900501681No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6120.128195728903738No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5630.11793169178562825No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5220.10934341582965888No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5130.10745818452225096No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4870.10201196074529478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)