FastQCFastQC Report
Wed 8 May 2024
EGAF00007961417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504786
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37860.7500208008938442No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30660.6073861002484221No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21710.4300832431961266No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13580.2690248937173376No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG12510.24782779237142077No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12070.2391112273319783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9080.17987820581394887No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8600.17036922577092073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7600.15055885068127878No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7260.14382332315080054No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6730.13332382435329032No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6610.13094657934253326No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6190.12262622180488364No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5580.11054189300020206No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5350.10598550672958441No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5330.10558929922779157No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5320.10539119547689517No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.10380636546972381No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5050.10004239420269183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)