FastQCFastQC Report
Wed 8 May 2024
EGAF00007961419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484852
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61741.273378268007557No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36440.7515695511207543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21640.44632176416720976No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13190.2720417776971117No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG12030.24811695115210414No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11630.23986701096417049No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8210.1693300223573379No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7540.15551137254254907No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7510.15489262702845402No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7000.14437395328883865No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6320.13034905496935148No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5880.12127412076262448No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5730.11818039319214935No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5430.11199293805119913No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5060.10436174337736051No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5040.10394924636796382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)