FastQCFastQC Report
Wed 8 May 2024
EGAF00007961421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486565
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43900.9022432768489307No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30940.6358862639112965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16150.331918654239413No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11180.22977402813601475No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10340.21251014766783474No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9610.1975070134514402No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9210.1892861179904021No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9040.18579223741946094No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9010.18517567025988307No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8490.17448850616053352No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8450.17366641661442972No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8280.17017253604348853No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8250.16955596888391067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8030.16503447638033972No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7400.15208656602920473No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7350.15105895409657497No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7210.14818164068521164No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7030.1444822377277445No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6930.14242701386248496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6770.13913865567806974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6710.137905521358914No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6670.1370834318128102No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5590.11488701406800737No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.11077656633748832No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5090.10461089474170975No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4960.10193910371687236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)