FastQCFastQC Report
Wed 8 May 2024
EGAF00007961423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461874
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61831.338676781979501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42130.9121535310495936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14860.32173276694509756No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10330.22365407015766206No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10110.21889086634017071No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8580.18576494888216266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8520.1844658932955741No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8490.18381636550227984No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8430.1825173099156913No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8220.17797061536263137No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7830.16952675404980577No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7810.16909373552094292No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7460.16151591126584305No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7360.1593508186215288No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7280.1576187445060774No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6900.14939139245768326No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6520.14116404040928912No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6230.1348852717407778No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6140.13293668836089498No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6090.13185414203873785No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5920.1281734845434036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5560.12037915102387231No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5010.10847114148014395No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5010.10847114148014395No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4830.10457397472037827No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4710.10197586354720117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4690.10154284501833832No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4620.10002728016731835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)