FastQCFastQC Report
Wed 8 May 2024
EGAF00007961425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488469
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45040.9220646550753476No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29870.6115024699622699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15280.3128141192173915No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11980.24525609608798102No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10600.21700455914295483No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9910.2028787906704417No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9770.20001269271949706No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9210.18854830091571828No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9140.18711525194024595No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8980.1838397114248806No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8140.16664312371921247No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7980.16336758320384712No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7800.1596826001240611No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7610.15579289576206473No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7590.15538345319764404No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7510.15374568293996138No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7490.15333624037554072No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.14187184857176197No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6930.14187184857176197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6850.1402340783140793No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6800.13921047190302763No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6180.12651775240598687No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5970.12221860547956985No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5190.10625034546716373No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5110.10461257520948104No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5080.10399841136285005No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4930.10092759212969502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)