FastQCFastQC Report
Wed 8 May 2024
EGAF00007961427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471676
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60551.283720180802076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43000.9116427378115487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15430.32713133591702775No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10280.2179462173186679No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10220.21667415768451226No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8750.18550869664769884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8630.18296457737938754No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8550.18126849786718002No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8250.17490819969640176No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8130.17236408042809048No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8080.17130403073296077No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7980.16918393134270135No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.16473172262315658No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7230.15328318591575574No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7180.15222313622062603No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7000.14840695731815906No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6690.1418346492083549No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6410.1358983709156285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6330.134202291403421No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6290.13335425164731723No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5640.11957360561063103No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5250.1113052179886193No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5220.11066918817154148No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.11003315835446366No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5070.10748903908615234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.10430889000076324No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4760.10091673097634817No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4750.10070472103732224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)