FastQCFastQC Report
Wed 8 May 2024
EGAF00007961436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504849
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20870.41339093471513266No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10090.1998617408373593No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9340.18500581361951793No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7710.15271893179940932No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7350.14558808673484547No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5910.11706470647659002No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5580.11052809850073983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)