FastQCFastQC Report
Wed 8 May 2024
EGAF00007961437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504849
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21170.4193333056022692No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10600.2099637713454914No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10300.20402140045835487No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9030.17886536370281014No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8230.16301904133711267No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6310.12498786765943876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6060.1200358919201583No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5650.11191465170773836No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5060.10022798896303646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)