FastQCFastQC Report
Wed 8 May 2024
EGAF00007961438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488226
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20330.41640551711707285No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9790.2005218894528354No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9040.18516015124143329No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7250.14849680271022025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7200.14747268682946013No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5890.12064085075354446No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4910.10056817949064573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)