FastQCFastQC Report
Wed 8 May 2024
EGAF00007961439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488226
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24670.5052987755670529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.4198875111116573No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10200.2089196396750685No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9800.2007267126289874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9090.1861842671221934No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7390.15136432717634865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.1282193082711695No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.10999004559363902No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4970.10179711854755791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)