FastQCFastQC Report
Wed 8 May 2024
EGAF00007961440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507955
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19820.39019204457087736No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9960.196080361449341No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9140.17993719916134304No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7440.14646966758866434No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7250.14272917876583557No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6020.11851443533383862No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5160.10158380171471883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)