FastQCFastQC Report
Wed 8 May 2024
EGAF00007961441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507955
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20260.3988542292132177No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10310.20297073559665718No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10040.19765530411158472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9140.17993719916134304No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7440.14646966758866434No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6630.13052337313344686No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.11398647517988798No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5450.10729296886535225No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5210.10256814087862114No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5200.10237127304584068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)