FastQCFastQC Report
Wed 8 May 2024
EGAF00007961442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490053
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19660.401181096738516No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10420.21263006246263158No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9130.18630637910593345No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7180.14651476472952926No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7140.14569852648591072No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5670.11570177103292908No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5250.10713126947493434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)