FastQCFastQC Report
Wed 8 May 2024
EGAF00007961443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490053
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24450.498925626411837No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19950.40709882400475045No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10780.21997620665519854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9700.19793777407749774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8990.1834495452532685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.15202437287395446No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.12223167698187747No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5220.10651909079222044No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5150.10509067386588798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)