FastQCFastQC Report
Wed 8 May 2024
EGAF00007961445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520747
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17060.3276063040209545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.1517051466451079No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7060.1355744728246154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6520.1252047539400131No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5960.1144509713930181No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5470.10504141166439748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)