FastQCFastQC Report
Wed 8 May 2024
EGAF00007961447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503605
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25570.5077392003653657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15360.3050009431995314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8040.1596489312060047No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.14614628528310877No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.10623405248160761No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5310.10543977919202549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)