FastQCFastQC Report
Wed 8 May 2024
EGAF00007961449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525099
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16470.313655139316586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.1626359981641557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7170.13654567995749373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7020.13368907577428257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5390.10264731031672124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5340.10169510892231749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)