FastQCFastQC Report
Wed 8 May 2024
EGAF00007961450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504740
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8140.16127114950271426No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6900.13670404564726393No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6150.12184491025082221No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5390.10678765304909459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)