FastQCFastQC Report
Wed 8 May 2024
EGAF00007961465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517387
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8240.15926182915303244No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7090.13703475348240293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6170.11925309294589931No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5340.10321094267927103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)