FastQCFastQC Report
Wed 8 May 2024
EGAF00007961468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510240
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14890.2918234556287237No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14380.2818281592975854No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11060.2167607400439009No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8740.17129194104735027No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7660.15012543116964566No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7360.1442458450925055No Hit
GGCGTGGCGGCCGGTTTCGTTCAGCGGGATGTGCTGTACAGCAC7180.14071809344622138No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6800.1332706177485105No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6410.12562715584822828No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6250.12249137660708687No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5800.1136719974913766No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5310.10406867356538099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)