FastQCFastQC Report
Wed 8 May 2024
EGAF00007961469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510240
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18610.36473032298526187No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14910.2922154280338664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13800.2704609595484478No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12550.2459626842270304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8410.16482439636249607No Hit
GCCCGTCGTGCGGCTCACTCCATGCACCCGC7950.15580903104421448No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7550.14796958294136092No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7550.14796958294136092No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7290.14287394167450612No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7030.1377783004076513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7010.1373863280025086No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6680.13091878331765444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6200.12151144559423017No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5790.11347601128880527No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5410.10602853559109439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)