FastQCFastQC Report
Wed 8 May 2024
EGAF00007961470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489988
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14180.28939484232266915No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13280.27102704556029944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10570.21571956864249736No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.16184069813954627No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7500.15306497301974742No Hit
GGCGTGGCGGCCGGTTTCGTTCAGCGGGATGTGCTGTACAGCAC7190.14673828746826453No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7070.14428924789994857No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6050.12347241156926293No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6040.12326832493856991No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5790.11816615917124501No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5480.11183947361976211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)