FastQCFastQC Report
Wed 8 May 2024
EGAF00007961471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489988
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24490.4998081585671486No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17360.35429439088304204No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13750.2806191172028703No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12600.2571491546731757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11900.2428630905246659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8120.16571834412271322No Hit
GCCCGTCGTGCGGCTCACTCCATGCACCCGC7750.15816713878707234No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7750.15816713878707234No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7230.14755463399103652No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6770.13816664897915867No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6450.13163587679698277No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6380.1302072703821318No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5560.11347216666530609No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5400.11020678057421815No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5380.10979860731283216No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5020.10245148860788426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)