FastQCFastQC Report
Wed 8 May 2024
EGAF00007961473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512453
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18730.3654969333773048No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15780.3079306785207619No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13530.2640242129522122No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13400.26148739494158485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8480.16547859023168954No Hit
GCCCGTCGTGCGGCTCACTCCATGCACCCGC8190.15981953466952092No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8190.15981953466952092No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7950.15513617834220894No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7380.14401320706484302No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7360.14362292737090035No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7100.13854929134964572No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6220.12137698481616851No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6020.11747418787674187No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5850.11415681047822922No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5850.11415681047822922No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5620.10966859399788857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)