FastQCFastQC Report
Wed 8 May 2024
EGAF00007961474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493448
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14070.2851364277492259No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13270.2689239798317148No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11150.2259609928503105No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8000.16212447917511064No Hit
GGCGTGGCGGCCGGTTTCGTTCAGCGGGATGTGCTGTACAGCAC7510.15219435482563512No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7490.15178904362769732No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7320.14834389844522625No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6150.1246331933658663No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5790.11733759180298632No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5750.11652696940711077No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5530.11206854622979523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)