FastQCFastQC Report
Wed 8 May 2024
EGAF00007961475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493448
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24470.4958982506768697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17300.3505941862161768No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13640.27642223699356366No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12990.2632496230605859No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12540.2541301211069859No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8290.1680014915452084No Hit
GCCCGTCGTGCGGCTCACTCCATGCACCCGC8160.16536696875861287No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7560.15320763282047956No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7210.14611468685656848No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7030.14246688607512847No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6800.13780580729884406No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6540.13253676172565296No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5780.11713493620401745No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5770.11693228060504854No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5660.11470306901639078No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.10315169987516414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)