FastQCFastQC Report
Wed 8 May 2024
EGAF00007961493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513060
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42940.836939149417222No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21100.4112579425408334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19170.37364050988188513No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17330.33777725802050446No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9030.17600280668927612No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8770.170935173274081No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.12591119946984758No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5900.11499629672942736No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.10895411842669472No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5240.10213230421393209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)