FastQCFastQC Report
Wed 8 May 2024
EGAF00007961494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494315
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20000.40460030547323067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19740.3993405015020786No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16370.33116535002983927No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12530.253482091378979No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8630.17458503181169902No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7910.16001942081466272No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7790.15759181898182334No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7630.1543550165380375No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6040.12218929225291567No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5370.10863518201956243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5260.10640988033945965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)