FastQCFastQC Report
Wed 8 May 2024
EGAF00007961495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494315
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40620.8217432204161315No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23940.4843065656514571No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20300.41066931005532914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18630.3768851845483143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16110.32590554605868727No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9590.1940058464744141No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7980.16143552188381902No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6730.1361480027917421No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5520.11166968431061165No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.11126508400513843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)