FastQCFastQC Report
Wed 8 May 2024
EGAF00007961497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514322
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42390.8241918486862315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21660.4211369531149747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19940.38769486819541066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17010.33072666539638595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.18023728325834787No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8550.16623827096643737No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.13221289386804375No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6320.12288021900677007No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.1135475441454964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5390.10479816146305232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)